AI LAB

OPAL Plus

Length-specific MoRF prediction in intrinsically disordered protein sequences. (ACADEMIC USE ONLY)

Algorithm Computation


Number of jobs currently in queue: 0
Average processing time per sequence is 15 minutes
Click here to add sample protein sequence

(Click here to download sample file)



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References

Sharma, R., Sharma, A., Raicar, G., Tsunoda, T., and Patil, A., OPAL+: Length-specific MoRF prediction in intrinsically disordered protein sequences, 2018

Sharma, R., Raicar, G., Tsunoda, T., Patil, A., and Sharma, A., OPAL: prediction of MoRF regions in intrinsically disordered protein sequence, Bioinformatics, vol. 34, no. 11, pp. 1850-1858, 2018. Webserver

Sharma, R., Bayarjargal, M., Tsunoda, T., Patil, A. and Sharma, A., MoRFPred-plus: Computational Identification of MoRFs in Protein Sequence using physicochemical properties and HMM profiles, Journal of Theoretical Biology, vol. 437, pp. 9-16, 2018

Malhis N, and Gsponer J. Computational Identification of MoRFs in Protein Sequences. Bioinformatics (2015) 31 (11): 1738-1744

Notes

Procedure for producing the HMM Alignment File

Procedure to produce hsa2, hsb2, spd3 files using SPIDER2 server

Locally running OPAL program